SwissTargetPrediction: updated data and new features for efficient prediction of protein targets of small molecules

A Daina, O Michielin, V Zoete - Nucleic acids research, 2019 - academic.oup.com
Doing so, we focused the screening on similar molecules only… The upper black banner
provides links to an updated list of … of SIB Swiss Institute of Bioinformatics to provide free access to …

PubChem in 2021: new data content and improved web interfaces

S Kim, J Chen, T Cheng, A Gindulyte, J He… - … acids research, 2021 - academic.oup.com
… since our latest update paper published in this journal (1). … in this list directs to the
SpringerMaterials web page showing a list of … While these changes do not directly affect web

[HTML][HTML] Database resources of the national center for biotechnology information

EW Sayers, R Agarwala, EE Bolton, JR Brister… - … acids research, 2019 - ncbi.nlm.nih.gov
… -line, so that the sequences do not need to be downloaded by … An alphabetical list of NCBI
resources is available from a link … RSS feeds that provide updates on services and databases. …

VEuPathDB: the eukaryotic pathogen, vector and host bioinformatics resource center

B Amos, C Aurrecoechea, M Barba… - … Acids Research, 2022 - academic.oup.com
… Upgrades to the infrastructure and workflows made over the past 5 years support numerous
updates to our web interface, tools, searches and strategies, and Galaxy workspace. …

g: Profiler—interoperable web service for functional enrichment analysis and gene identifier mapping (2023 update)

L Kolberg, U Raudvere, I Kuzmin, P Adler… - … acids research, 2023 - academic.oup.com
… To do this in g:Profiler, users can provide a list of background … users can generate a short
link that enables anyone with the … :Profiler as part of their bioinformatics courses worldwide. We …

OrthoDB v11: annotation of orthologs in the widest sampling of organismal diversity

D Kuznetsov, F Tegenfeldt, M Manni… - … Acids Research, 2023 - academic.oup.com
… This update of the underlying data to over 18 000 … annotations, a link to OGs containing this
gene, and the list of pair-… sequenced genomes, for performing online BUSCO analysis and for …

The PATRIC Bioinformatics Resource Center: expanding data and analysis capabilities

JJ Davis, AR Wattam, RK Aziz, T Brettin… - … acids research, 2020 - academic.oup.com
… recent updates to the PATRIC resource, including new web-… The results are returned
as a list of the most similar genome … the data store and performing common analyses. This …

Glycosciences. DB: an annotated data collection linking glycomics and proteomics data (2018 update)

M Böhm, A Bohne-Lang, M Frank, A Loss… - … Acids Research, 2019 - academic.oup.com
conduct glycan substructure queries beyond the former limitation of five residues, a new
search algorithm has been designed. Classical bioinformatics … DB provides a list of the wwPDB …

Expression Atlas update: from tissues to single cells

I Papatheodorou, P Moreno, J Manning… - … acids research, 2020 - academic.oup.com
… -value online bioinformatics resource that includes a database, user interface and web-service …
The results page shows a list of experiments from one or more species, depending on the …

[HTML][HTML] The EWAS Catalog: a database of epigenome-wide association studies

T Battram, P Yousefi, G Crawford, C Prince… - … open research, 2022 - ncbi.nlm.nih.gov
… The EWAS Catalog data extraction team continue to update … extracted from the European
Bioinformatics Institute database. … list of grants funding is available on the ALSPAC website (…